PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015872425.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NF-YB
Protein Properties Length: 129aa    MW: 13827.6 Da    PI: 5.7778
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015872425.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB181.47.5e-5733126194
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                     vreqdr+lPian+srimkk+lPan+ki+kdak+tvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfedy+eplkvyl++yre+ 
  XP_015872425.1  33 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYREVI 126
                     69******************************************************************************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-5232125IPR009072Histone-fold
SuperFamilySSF471133.57E-3936125IPR009072Histone-fold
PfamPF008088.9E-2939103IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.4E-216785No hitNo description
PROSITE patternPS0068507086IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.4E-2186104No hitNo description
PRINTSPR006151.4E-21105123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MAEAAPTSPA GGSHESGGEQ SPHAGGGGGG GGVREQDRYL PIANISRIMK KALPANGKIA  60
KDAKDTVQEC VSEFISFITS EASDKCQKEK RKTINGDDLL WAMATLGFED YIEPLKVYLA  120
RYREVIVNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A9e-4932124193NF-YB
4awl_B9e-4932124294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A9e-4932124294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015872425.12e-92PREDICTED: nuclear transcription factor Y subunit B-3-like
RefseqXP_015872426.12e-92PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotQ8VYK41e-67NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A067DNK36e-77A0A067DNK3_CITSI; Uncharacterized protein
TrEMBLV4SNQ41e-77V4SNQ4_9R
STRINGPOPTR_0008s04440.14e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25453382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.35e-70nuclear factor Y, subunit B8